A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3573585



Internal ID18355097
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:12797687..12802286hg38UCSC Ensembl
InnerchrX:12815806..12820405hg19UCSC Ensembl
CytobandXp22.2
Allele length
AssemblyAllele length
hg384600
hg194600
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9823555, essv9823557, essv9823558
Samples400622SJ, 400838AM, 401054VM
Known GenesPRPS2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3573585
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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