A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3573531



Internal ID18701729
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:46136271..46199252hg38UCSC Ensembl
Innerchr17:44213637..44276618hg19UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3862982
hg1962982
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv943e212
Supporting Variantsessv9814475, essv9814474, essv9814471, essv9814472
Samples400453LN, 400134WK, 401017SC, 400135DR
Known GenesKANSL1, KANSL1-AS1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3573531
Frequency
Sample Size873
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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