Variant DetailsVariant: esv3572669 Internal ID | 18354181 | Landmark | | Location Information | | Cytoband | 8p12 | Allele length | Assembly | Allele length | hg38 | 6664 | hg19 | 6664 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9787807, essv9787810, essv9787809, essv9787808, essv9787813, essv9787812 | Samples | 401117NA, 400953MR, 401112LG, 401881TJ, 400084DM, 400532MH | Known Genes | NRG1 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3572669
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 6 | Observed Complex | 0 | Frequency | n/a |
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