A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3572606



Internal ID18354118
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:18067129..18071966hg38UCSC Ensembl
Innerchr8:17924638..17929475hg19UCSC Ensembl
Cytoband8p22
Allele length
AssemblyAllele length
hg384838
hg194838
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2055e212
Supporting Variantsessv9787386, essv9787387
Samples401151RJ, 401661HD
Known GenesASAH1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3572606
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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