A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3572559



Internal ID18354071
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:15543403..15565761hg38UCSC Ensembl
Innerchr8:15400912..15423270hg19UCSC Ensembl
Cytoband8p22
Allele length
AssemblyAllele length
hg3822359
hg1922359
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2049e212
Supporting Variantsessv9787258, essv9787245, essv9787262, essv9787256, essv9787261, essv9787242, essv9787275, essv9787270, essv9787263, essv9787276, essv9787272, essv9787269, essv9787264, essv9787271, essv9787257, essv9787248, essv9787274, essv9787246, essv9787254, essv9787265, essv9787273, essv9787251, essv9787253, essv9787241, essv9787267, essv9787252, essv9787250, essv9787259, essv9787260, essv9787249, essv9787247, essv9787268, essv9787243
Samples400984LD, 401852SK, 400553PP, 400948EV, 401214BJ, 400817MB, 401495NR, 401532LJ, 401746WW, 400929MM, 400302HW, 400825TW, 401477ST, 401589HP, 401694SG, 401311GL, 400518MS, 401677MM, 400136DM, 400454RE, 402009WP, 400246MG, 401881TJ, 401693RC, 400971MK, 400586RD, 401166WJ, 400323AA, 400315DA, 400508RD, 401284NA, 401882CR, 400532MH
Known GenesTUSC3
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3572559
Frequency
Sample Size873
Observed Gain0
Observed Loss33
Observed Complex0
Frequencyn/a


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