A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3572347



Internal ID18700545
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:155784581..155786349hg38UCSC Ensembl
Innerchr7:155577275..155579043hg19UCSC Ensembl
Cytoband7q36.3
Allele length
AssemblyAllele length
hg381769
hg191769
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv2007e212
Supporting Variantsessv9786437, essv9786442, essv9786452, essv9786445, essv9786438, essv9786450, essv9786449, essv9786440, essv9786443, essv9786436, essv9786448, essv9786441, essv9786447, essv9786446, essv9786439, essv9786451
Samples400739SS, 400325BE, 401093VL, 400340CD, 400245SJ, 400333CC, 400383HL, 401540NA, 401477ST, 401736BF, 401717LP, 401981GF, 400422PN, 400205SP, 401166WJ, 400315DA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3572347
Frequency
Sample Size873
Observed Gain0
Observed Loss16
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer