A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3572030



Internal ID18700228
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:101416516..101422928hg38UCSC Ensembl
Innerchr7:101059797..101066209hg19UCSC Ensembl
Cytoband7q22.1
Allele length
AssemblyAllele length
hg386413
hg196413
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9784527, essv9784525, essv9784526, essv9784524, essv9784523
Samples401146US, 401074CM, 400191MP, 401766MR, 400093BL
Known GenesCOL26A1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3572030
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer