Variant DetailsVariant: esv3571828 | Internal ID | 18700026 | | Landmark | | | Location Information | | | Cytoband | 7p13 | | Allele length | | Assembly | Allele length | | hg38 | 1103 | | hg19 | 1103 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | essv9783728, essv9783621, essv9783648, essv9783626, essv9783697, essv9783693, essv9783681, essv9783679, essv9783651, essv9783775, essv9783757, essv9783773, essv9783683, essv9783743, essv9783747, essv9783671, essv9783673, essv9783708, essv9783752, essv9783642, essv9783759, essv9783735, essv9783762, essv9783741, essv9783721, essv9783738, essv9783661, essv9783787, essv9783730, essv9783758, essv9783716, essv9783624, essv9783660, essv9783634, essv9783709, essv9783691, essv9783676, essv9783790, essv9783703, essv9783784, essv9783788, essv9783774, essv9783696, essv9783745, essv9783740, essv9783640, essv9783690, essv9783688, essv9783742, essv9783729, essv9783736, essv9783781, essv9783719, essv9783715, essv9783674, essv9783675, essv9783706, essv9783780, essv9783631, essv9783698, essv9783665, essv9783686, essv9783717, essv9783618, essv9783771, essv9783731, essv9783664, essv9783763, essv9783750, essv9783638, essv9783627, essv9783712, essv9783766, essv9783707, essv9783629, essv9783687, essv9783619, essv9783786, essv9783760, essv9783770, essv9783662, essv9783704, essv9783652, essv9783628, essv9783694, essv9783620, essv9783702, essv9783727, essv9783768, essv9783718, essv9783684, essv9783764, essv9783623, essv9783732, essv9783726, essv9783783, essv9783657, essv9783653, essv9783739, essv9783692, essv9783793, essv9783765, essv9783695, essv9783658, essv9783753, essv9783635, essv9783792, essv9783754, essv9783723, essv9783630, essv9783625, essv9783791, essv9783782, essv9783769, essv9783666, essv9783779, essv9783714, essv9783668, essv9783705, essv9783682, essv9783643, essv9783748, essv9783672, essv9783646, essv9783650, essv9783725, essv9783777, essv9783617, essv9783637, essv9783776, essv9783737, essv9783677, essv9783685, essv9783639, essv9783772, essv9783713, essv9783761, essv9783734, essv9783663, essv9783701, essv9783636, essv9783699, essv9783749, essv9783670, essv9783654, essv9783655, essv9783647, essv9783746, essv9783680, essv9783659, essv9783751, essv9783785, essv9783669, essv9783641, essv9783720, essv9783649, essv9783632, essv9783724, essv9783710 | | Samples | 400287BP, 400920MK, 400359OR, 400424LN, 400145BL, 401292ER, 400987FB, 400439IM, 400204SC, 401005BL, 400739SS, 401640WJ, 400619MP, 400105BB, 401146US, 400455SJ, 401819BS, 400594VJ, 400101EH, 401235IA, 401380OL, 400468OB, 401460LW, 401503MJ, 401498HH, 401299ST, 401036WS, 400221VM, 401079HJ, 400141CC, 400068PW, 401183HP, 400852WJ, 401427CB, 401927SK, 401931JL, 400449PK, 401249TP, 400834SS, 400553PP, 400077EB, 401949MN, 401824MM, 400641WJ, 400797ST, 400425SL, 400620MT, 400523GB, 400379BB, 401136LB, 401019MP, 401258PC, 401975VD, 400674CA, 401924ST, 400718PS, 401792KR, 400743LS, 401687LR, 401006ES, 400337HG, 400773GS, 402065BG, 401664SD, 400817MB, 401550SP, 401038LN, 400338SR, 402061PI, 401495NR, 401818PC, 400478WE, 400333CC, 401746WW, 400579HJ, 401609MB, 401029SD, 401353BC, 401739BJ, 401620BA, 400060MC, 401377MA, 401873BK, 401505WI, 400411TG, 400383HL, 400615RI, 400038CK, 400007RG, 401331LJ, 401085LA, 400515ZG, 401900RJ, 401027KW, 401591BE, 401540NA, 401477ST, 400955BE, 401834CB, 400207HN, 400660GK, 401357MH, 401804FG, 400093BL, 400543CK, 400381CA, 400043HC, 401730MS, 401419SW, 400724CD, 401943KA, 400124FR, 401606CG, 401262RR, 402054BD, 401892MJ, 401443JK, 401087SF, 400886MP, 401875FG, 400278PD, 400248JO, 401580CA, 401369GR, 401696CG, 401176BD, 400030WD, 400201PK, 400728PB, 400732MA, 400458LS, 400770MA, 400103BN, 402009WP, 400845ML, 401847RK, 402051AF, 401277RA, 401611CD, 401552BK, 401012TP, 400235MP, 400267GD, 400312CR, 401861GG, 400996MC, 400205SP, 401143LK, 400879DS, 400785AK, 400108BJ, 400261RN, 400178RH, 401932GN, 400209BS, 400238BB, 400255CD, 400091BS, 400494ML | | Known Genes | | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3571828
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 159 | | Observed Complex | 0 | | Frequency | n/a |
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