A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571826



Internal ID18353338
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:44614766..44618927hg38UCSC Ensembl
Innerchr7:44654365..44658526hg19UCSC Ensembl
Cytoband7p13
Allele length
AssemblyAllele length
hg384162
hg194162
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1906e212
Supporting Variantsessv9783614, essv9783613
Samples401391PJ, 400084DM
Known GenesOGDH
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571826
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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