A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571806



Internal ID18700004
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:41498890..41508471hg38UCSC Ensembl
Innerchr7:41538488..41548069hg19UCSC Ensembl
Cytoband7p14.1
Allele length
AssemblyAllele length
hg389582
hg199582
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9783473, essv9783474, essv9783475, essv9783472, essv9783471, essv9783470
Samples401852SK, 401064FR, 401214BJ, 400825TW, 400454RE, 401395OP
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571806
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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