A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571627



Internal ID18699825
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:10182013..10202801hg38UCSC Ensembl
Innerchr7:10221640..10242428hg19UCSC Ensembl
Cytoband7p21.3
Allele length
AssemblyAllele length
hg3820789
hg1920789
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1869e212
Supporting Variantsessv9783023, essv9783043, essv9783029, essv9783027, essv9783026, essv9783025, essv9783036, essv9783024, essv9783031, essv9783042, essv9783018, essv9783039, essv9783037, essv9783028, essv9783021, essv9783030, essv9783019, essv9783034, essv9783035, essv9783020, essv9783040, essv9783041, essv9783038, essv9783032
Samples400739SS, 400802DP, 40031BA, 401074CM, 401468RL, 400545EW, 400425SL, 400528LR, 401832MC, 401566DD, 400041LJ, 400207HN, 400082SD, 400994HJ, 400076LC, 400681MC, 400886MP, 400248JO, 400177CG, 400458LS, 401365DJ, 401571SD, 400106PC, 400234CA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571627
Frequency
Sample Size873
Observed Gain0
Observed Loss24
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer