A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571562



Internal ID18353074
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:2690000..2695054hg38UCSC Ensembl
Innerchr7:2729634..2734688hg19UCSC Ensembl
Cytoband7p22.3
Allele length
AssemblyAllele length
hg385055
hg195055
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9782821, essv9782823, essv9782825, essv9782820, essv9782831, essv9782829, essv9782834, essv9782827, essv9782826, essv9782832, essv9782835, essv9782830, essv9782824, essv9782828
Samples400534ME, 401734PG, 400730SH, 400948EV, 401297KC, 401165SB, 401965TG, 401620BA, 400663MD, 400705KK, 400458LS, 401288LD, 401912HD, 401453OL
Known GenesAMZ1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571562
Frequency
Sample Size873
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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