A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571477



Internal ID18352989
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:152034739..152048040hg38UCSC Ensembl
Innerchr6:152355874..152369175hg19UCSC Ensembl
Cytoband6q25.1
Allele length
AssemblyAllele length
hg3813302
hg1913302
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9782413, essv9782412
Samples402063WM, 400007RG
Known GenesESR1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571477
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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