A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571469



Internal ID18699667
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:151913248..151917697hg38UCSC Ensembl
Innerchr6:152234383..152238832hg19UCSC Ensembl
Cytoband6q25.1
Allele length
AssemblyAllele length
hg384450
hg194450
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1842e212
Supporting Variantsessv9782357, essv9782358
Samples400083TG, 400653GP
Known GenesESR1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571469
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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