A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3571353



Internal ID18699551
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:110073402..110092907hg38UCSC Ensembl
Innerchr6:110394605..110414110hg19UCSC Ensembl
Cytoband6q21
Allele length
AssemblyAllele length
hg3819506
hg1919506
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1824e212
Supporting Variantsessv9781358, essv9781352, essv9781351, essv9781353, essv9781354, essv9781357, essv9781355
Samples401908YM, 400478WE, 401997HB, 401913GT, 401552BK, 401143LK, 400108BJ
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3571353
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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