Variant DetailsVariant: esv3570795Internal ID | 18352307 | Landmark | | Location Information | | Cytoband | 6p22.3 | Allele length | Assembly | Allele length | hg38 | 7909 | hg19 | 7909 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9778241, essv9778233, essv9778232, essv9778235, essv9778239, essv9778238, essv9778240, essv9778237, essv9778236, essv9778242 | Samples | 400294HD, 401384BP, 401918CA, 401214BJ, 401620BA, 401377MA, 401979TB, 401594MP, 400978JG, 401458RT | Known Genes | CASC15 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3570795
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 10 | Observed Complex | 0 | Frequency | n/a |
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