A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570770



Internal ID18352282
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:10685596..10689838hg38UCSC Ensembl
Innerchr6:10685829..10690071hg19UCSC Ensembl
Cytoband6p24.2
Allele length
AssemblyAllele length
hg384243
hg194243
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9778131, essv9778132
Samples401655DC, 401361GG
Known GenesC6orf52
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570770
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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