A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570743



Internal ID18352255
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:6132203..6145548hg38UCSC Ensembl
Innerchr6:6132436..6145781hg19UCSC Ensembl
Cytoband6p25.1
Allele length
AssemblyAllele length
hg3813346
hg1913346
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1709e212
Supporting Variantsessv9778040, essv9778038, essv9778039
Samples400984LD, 400298ME, 400833BB
Known GenesF13A1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570743
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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