A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570663



Internal ID18698861
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:257340..302273hg38UCSC Ensembl
Innerchr6:257340..302273hg19UCSC Ensembl
Cytoband6p25.3
Allele length
AssemblyAllele length
hg3844934
hg1944934
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1693e212
Supporting Variantsessv9777829, essv9777830
Samples401155ML, 400109LJ
Known GenesDUSP22
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570663
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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