A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570641



Internal ID18698839
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:257340..294826hg38UCSC Ensembl
Innerchr6:257340..294826hg19UCSC Ensembl
Cytoband6p25.3
Allele length
AssemblyAllele length
hg3837487
hg1937487
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1693e212
Supporting Variantsessv9777767, essv9777745, essv9777758, essv9777748, essv9777750, essv9777734, essv9777774, essv9777735, essv9777763, essv9777762, essv9777785, essv9777725, essv9777784, essv9777737, essv9777726, essv9777741, essv9777783, essv9777747, essv9777769, essv9777724, essv9777722, essv9777766, essv9777759, essv9777778, essv9777736, essv9777770, essv9777752, essv9777760, essv9777718, essv9777777, essv9777771, essv9777739, essv9777782, essv9777761, essv9777729, essv9777749, essv9777731, essv9777775, essv9777765, essv9777719
Samples401474CE, 401212HJ, 400737GC, 400313DF, 401673DM, 401518VK, 401036WS, 401674DD, 401536BD, 401924ST, 400343BD, 400600DP, 401214BJ, 400033KC, 401104DM, 400442FE, 402033WD, 401540NA, 400496BL, 401586RS, 401618HR, 401879HJ, 400171BJ, 400888MS, 401443JK, 400362TV, 401359HF, 401847RK, 401611CD, 400759FV, 400586RD, 401166WJ, 401215MJ, 400792RE, 400508RD, 400079AP, 400209BS, 400540BM, 400021ME, 400704LC
Known GenesDUSP22
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570641
Frequency
Sample Size873
Observed Gain0
Observed Loss40
Observed Complex0
Frequencyn/a


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