Variant DetailsVariant: esv3570546 | Internal ID | 18352058 | | Landmark | | | Location Information | | | Cytoband | 5q35.1 | | Allele length | | Assembly | Allele length | | hg38 | 8802 | | hg19 | 8802 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv1666e212 | | Supporting Variants | essv9776725, essv9776701, essv9776699, essv9776736, essv9776730, essv9776780, essv9776801, essv9776718, essv9776797, essv9776746, essv9776726, essv9776774, essv9776740, essv9776731, essv9776727, essv9776777, essv9776719, essv9776732, essv9776757, essv9776792, essv9776765, essv9776735, essv9776799, essv9776769, essv9776758, essv9776754, essv9776709, essv9776734, essv9776703, essv9776798, essv9776759, essv9776745, essv9776723, essv9776781, essv9776715, essv9776761, essv9776706, essv9776782, essv9776752, essv9776716, essv9776737, essv9776808, essv9776787, essv9776784, essv9776791, essv9776806, essv9776760, essv9776751, essv9776705, essv9776793, essv9776775, essv9776738, essv9776710, essv9776795, essv9776712, essv9776748, essv9776785, essv9776807, essv9776747, essv9776724, essv9776762, essv9776788, essv9776804, essv9776766, essv9776794, essv9776809, essv9776707, essv9776763, essv9776742, essv9776779, essv9776713, essv9776741, essv9776721, essv9776803, essv9776743, essv9776729, essv9776750, essv9776802, essv9776770, essv9776764, essv9776739, essv9776786, essv9776776, essv9776805, essv9776753, essv9776720, essv9776728, essv9776772, essv9776783, essv9776708, essv9776771, essv9776749, essv9776790, essv9776773, essv9776704, essv9776714, essv9776796, essv9776702, essv9776717, essv9776768 | | Samples | 401459HF, 400308SP, 401366WD, 400424LN, 400268SY, 401489CB, 401052BM, 401146US, 400554WB, 400889CM, 401592NR, 400512LR, 400574MA, 401195PN, 401721CP, 401093VL, 401355CD, 400523GB, 401258PC, 401975VD, 400606HW, 401860TJ, 400482MD, 401263HS, 401908YM, 400022WA, 400749VW, 400292LP, 400427SD, 400385LJ, 400353ML, 401234MB, 400198MD, 400383HL, 401785MJ, 400352CA, 400038CK, 401331LJ, 400825TW, 401900RJ, 401499JR, 400040CN, 400070PC, 402033WD, 400702PA, 401913GT, 402052ZA, 401357MH, 401454CD, 401348RB, 401519SA, 400082SD, 401475MK, 401730MS, 401506LK, 401943KA, 4000657TM, 400800MW, 401619BT, 402022SM, 400387HE, 400639RP, 401889FR, 400603CJ, 401875FG, 400278PD, 400014SL, 401176BD, 400474GF, 401514BA, 401922MW, 400177CG, 401361GG, 400601WC, 400376SJ, 400295PS, 401025SM, 401012TP, 400586RD, 401567BD, 401152MV, 400930MK, 400323AA, 401372RR, 401135CS, 400106PC, 401266HM, 400108BJ, 400261RN, 400581VJ, 400291VJ, 401053MF, 402024BB, 401480PG, 400890IT, 400152MR, 400234CA, 401246HH, 400782IE, 401207DA | | Known Genes | SLIT3 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3570546
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 100 | | Observed Complex | 0 | | Frequency | n/a |
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