A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570470



Internal ID18351982
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:141337905..141348151hg38UCSC Ensembl
Innerchr5:140717472..140727718hg19UCSC Ensembl
Cytoband5q31.3
Allele length
AssemblyAllele length
hg3810247
hg1910247
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9776335
Samples401812HG
Known GenesPCDHGA1, PCDHGA2, PCDHGA3
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570470
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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