A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570259



Internal ID18698457
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:97580891..97599590hg38UCSC Ensembl
Innerchr5:96916595..96935294hg19UCSC Ensembl
Cytoband5q15
Allele length
AssemblyAllele length
hg3818700
hg1918700
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9775568, essv9775572, essv9775571, essv9775565, essv9775566, essv9775570, essv9775569
Samples400970VE, 401117NA, 401064FR, 401263HS, 400478WE, 401125LM, 401341TS
Known GenesLOC102546227
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570259
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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