A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570108



Internal ID18351620
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:2603143..2679764hg38UCSC Ensembl
Innerchr16:2653144..2729765hg19UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg3876622
hg1976622
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv780e212
Supporting Variantsessv9809771
Samples400032RC
Known GenesERVK13-1, FLJ42627, LOC652276, PDPK1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570108
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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