A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3570001



Internal ID18698199
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:14868952..14870456hg38UCSC Ensembl
Innerchr5:14869061..14870565hg19UCSC Ensembl
Cytoband5p15.2
Allele length
AssemblyAllele length
hg381505
hg191505
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9774340, essv9774338, essv9774337, essv9774339
Samples401864CV, 401879HJ, 401812HG, 401359HF
Known GenesANKH
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3570001
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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