A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3569633



Internal ID18697831
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:101764232..101776411hg38UCSC Ensembl
Innerchr4:102685389..102697568hg19UCSC Ensembl
Cytoband4q24
Allele length
AssemblyAllele length
hg3812180
hg1912180
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1518e212
Supporting Variantsessv9772296, essv9772302, essv9772295, essv9772294, essv9772290, essv9772292, essv9772288, essv9772313, essv9772291, essv9772304, essv9772303, essv9772310, essv9772301, essv9772306, essv9772307, essv9772297, essv9772305, essv9772298, essv9772299, essv9772308, essv9772287, essv9772309, essv9772293
Samples401033DJ, 400432VA, 401769CR, 400325BE, 400620MT, 402062KR, 401792KR, 400121PL, 401725MR, 400533BB, 400070PC, 401210PB, 401652HL, 400171BJ, 400006DK, 401086MD, 401039PA, 401616WP, 400677HD, 400769SL, 400255CD, 400091BS, 400704LC
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3569633
Frequency
Sample Size873
Observed Gain0
Observed Loss23
Observed Complex0
Frequencyn/a


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