A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3569609



Internal ID18351121
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:55507718..55651515hg38UCSC Ensembl
Innerchr15:55799916..55943713hg19UCSC Ensembl
Cytoband15q21.3
Allele length
AssemblyAllele length
hg38143798
hg19143798
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9808741
Samples400336BG
Known GenesDYX1C1, PRTG, PYGO1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3569609
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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