A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3569607



Internal ID18351119
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:94821520..94827894hg38UCSC Ensembl
Innerchr4:95742671..95749045hg19UCSC Ensembl
Cytoband4q22.3
Allele length
AssemblyAllele length
hg386375
hg196375
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9772171, essv9772172
Samples400213DB, 401087SF
Known GenesBMPR1B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3569607
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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