Variant DetailsVariant: esv3569567 | Internal ID | 18351079 | | Landmark | | | Location Information | | | Cytoband | 4q21.3 | | Allele length | | Assembly | Allele length | | hg38 | 5961 | | hg19 | 5961 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv1509e212 | | Supporting Variants | essv9771967, essv9772013, essv9772003, essv9772008, essv9771942, essv9772019, essv9771998, essv9771935, essv9771957, essv9771992, essv9771975, essv9771958, essv9772024, essv9771987, essv9772017, essv9771961, essv9771952, essv9771988, essv9772015, essv9771945, essv9771968, essv9772004, essv9771990, essv9771956, essv9771941, essv9772018, essv9772016, essv9771940, essv9771974, essv9772028, essv9772032, essv9772020, essv9771971, essv9771976, essv9772012, essv9771936, essv9771962, essv9771946, essv9771972, essv9771947, essv9771981, essv9771934, essv9771951, essv9772007, essv9771937, essv9772034, essv9771993, essv9771979, essv9772014, essv9772027, essv9771973, essv9771963, essv9771970, essv9772005, essv9771997, essv9771986, essv9771996, essv9772002, essv9772026, essv9771943, essv9771964, essv9772025, essv9772006, essv9771991, essv9771954, essv9771948, essv9771950, essv9771995, essv9771985, essv9772009, essv9771939, essv9771980, essv9771959, essv9771984, essv9772029, essv9772001, essv9772031, essv9771960, essv9771938, essv9771949, essv9771965, essv9771982, essv9772021, essv9772010, essv9771999, essv9772023, essv9771969, essv9771994, essv9772030, essv9771983, essv9771953 | | Samples | 401706BJ, 401465TB, 400984LD, 400880TM, 401196CR, 400926LJ, 401235IA, 400683EC, 401415CB, 400574MA, 400272AE, 401966SR, 400995MS, 400068PW, 401442WR, 401151RJ, 401949MN, 401093VL, 401434VN, 400641WJ, 401426WD, 401402EN, 401355CD, 401297KC, 401239PR, 401113MJ, 400882DD, 400688FL, 400061DE, 401690HA, 400526DR, 400022WA, 400033KC, 401766MR, 401104DM, 401495NR, 401773AM, 400507VD, 401013GJ, 401732HW, 401505WI, 401437MJ, 400738WM, 401591BE, 401939GD, 401477ST, 401357MH, 401652HL, 401526WB, 400093BL, 400375KA, 401475MK, 401730MS, 401513KC, 401813DN, 401504RJ, 400705KK, 401311GL, 401075MN, 401443JK, 400520FM, 400354TJ, 400329HJ, 400030WD, 401616WP, 400201PK, 400837HN, 401898DS, 401496SL, 400770MA, 401016IT, 401268PS, 401288LD, 401012TP, 401438HT, 401149VA, 400769SL, 402073LQ, 401543DC, 401735LE, 400261RN, 402042BJ, 401882CR, 401510DG, 401993HM, 400668TD, 401490TL, 400704LC, 401207DA, 401497PR, 401482CB | | Known Genes | MAPK10 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3569567
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 91 | | Observed Complex | 0 | | Frequency | n/a |
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