A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3569432



Internal ID18697630
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:55625395..55637917hg38UCSC Ensembl
Innerchr4:56491562..56504084hg19UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg3812523
hg1912523
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1482e212
Supporting Variantsessv9771026, essv9771020, essv9771019, essv9771029, essv9771028, essv9771024, essv9771027, essv9771025, essv9771023, essv9771021
Samples400506GN, 400191MP, 400198MD, 401804FG, 400846MC, 402074RR, 401874DJ, 401608GE, 401611CD, 400890IT
Known GenesNMU
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3569432
Frequency
Sample Size873
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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