Variant DetailsVariant: esv3569431![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg38/?name=chr15:33564570..35080307;width=800;overview=1) Internal ID | 18350943 | Landmark | | Location Information | | Cytoband | 15q14 | Allele length | Assembly | Allele length | hg38 | 1515738 | hg19 | 1515738 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | essv9808323 | Samples | 401005BL | Known Genes | ACTC1, AQR, AVEN, CHRM5, EMC4, EMC7, GJD2, GOLGA8A, GOLGA8B, KATNBL1, LPCAT4, MIR1233-1, MIR1233-2, NOP10, NUTM1, PGBD4, RYR3, SLC12A6, ZNF770 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | esv3569431
| Frequency | Sample Size | 873 | Observed Gain | 1 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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