Variant DetailsVariant: esv3569177 | Internal ID | 18350689 | | Landmark | | | Location Information | | | Cytoband | 3q28 | | Allele length | | Assembly | Allele length | | hg38 | 8299 | | hg19 | 8299 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | dgv1439e212 | | Supporting Variants | essv9769325, essv9769253, essv9769277, essv9769299, essv9769266, essv9769304, essv9769286, essv9769303, essv9769271, essv9769285, essv9769330, essv9769332, essv9769276, essv9769324, essv9769284, essv9769270, essv9769280, essv9769258, essv9769287, essv9769306, essv9769246, essv9769314, essv9769308, essv9769331, essv9769281, essv9769293, essv9769296, essv9769248, essv9769290, essv9769274, essv9769269, essv9769255, essv9769315, essv9769265, essv9769321, essv9769251, essv9769294, essv9769288, essv9769329, essv9769283, essv9769254, essv9769261, essv9769328, essv9769252, essv9769301, essv9769326, essv9769273, essv9769313, essv9769322, essv9769263, essv9769279, essv9769291, essv9769298, essv9769316, essv9769250, essv9769297, essv9769264, essv9769262, essv9769327, essv9769272, essv9769268, essv9769307, essv9769259, essv9769317, essv9769305, essv9769302, essv9769320, essv9769310, essv9769260, essv9769282, essv9769319, essv9769249, essv9769247, essv9769275, essv9769295, essv9769309, essv9769257, essv9769292, essv9769318 | | Samples | 401636WR, 400911GA, 401749DJ, 400359OR, 400063BR, 400987FB, 400926LJ, 400569WC, 400204SC, 400534ME, 400268SY, 400105BB, 401986LC, 400455SJ, 400594VJ, 401673DM, 401074CM, 401249TP, 401845MJ, 401195PN, 400899NK, 401096SL, 401857VG, 400241CP, 401136LB, 400438DB, 400882DD, 400460DM, 401038LN, 400338SR, 400729HC, 400582WS, 401646MC, 400507VD, 400442FE, 401013GJ, 400577MK, 401085LA, 400738WM, 402052ZA, 401230NL, 401357MH, 401119DK, 401210PB, 400960TN, 401278DM, 401185LE, 401318AV, 400994HJ, 401930GD, 401606CG, 400705KK, 401444LD, 402054BD, 401889FR, 400978JG, 401011PJ, 40050SB, 400135DR, 400329HJ, 400274TL, 400881GS, 401844ZD, 400246MG, 401786WD, 400267GD, 402048WB, 401858TP, 400328LM, 400312CR, 400044HS, 400719TM, 400792RE, 401969DR, 400164SS, 401510DG, 400138LA, 401246HH, 400801HS | | Known Genes | TP63 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | esv3569177
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 79 | | Observed Complex | 0 | | Frequency | n/a |
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