A curated catalogue of human genomic structural variation

Variant Details

Variant: esv3568562

Internal ID18350074
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:2700481..2701736hg38UCSC Ensembl
Innerchr3:2742165..2743420hg19UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9837402, essv9837404, essv9837403, essv9837406, essv9837407, essv9837405, essv9837401
Samples401691HA, 400778SR, 400545EW, 400249BC, 401734PG, 400218WK, 401368WR
Known GenesCNTN4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Pubmed ID25503493
Accession Number(s)esv3568562
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0

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