A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568486



Internal ID18696684
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:49901390..49902867hg38UCSC Ensembl
Innerchr22:50295038..50296515hg19UCSC Ensembl
Cytoband22q13.33
Allele length
AssemblyAllele length
hg381478
hg191478
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1333e212
Supporting Variantsessv9822562, essv9822557, essv9822572, essv9822571, essv9822573, essv9822563, essv9822564, essv9822558, essv9822560, essv9822570, essv9822555, essv9822565, essv9822559, essv9822561, essv9822566, essv9822568
Samples400920MK, 401734PG, 400897MD, 401434VN, 400526DR, 400344DR, 400341GL, 401739BJ, 400002HK, 401010HT, 400769SL, 400328LM, 401809FU, 400778SR, 400835FD, 400079AP
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568486
Frequency
Sample Size873
Observed Gain0
Observed Loss16
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer