A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568455



Internal ID18696653
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:46208613..46219213hg38UCSC Ensembl
Innerchr22:46604510..46615110hg19UCSC Ensembl
Cytoband22q13.31
Allele length
AssemblyAllele length
hg3810601
hg1910601
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9822432, essv9822427, essv9822438, essv9822431, essv9822439, essv9822435, essv9822426, essv9822433, essv9822440, essv9822430, essv9822436, essv9822428, essv9822429, essv9822437
Samples400619MP, 400821FE, 400313DF, 400438DB, 400337HG, 400503HD, 401133JG, 400442FE, 400994HJ, 401311GL, 400520FM, 401922MW, 400845ML, 401143LK
Known GenesPPARA
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568455
Frequency
Sample Size873
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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