A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568335



Internal ID18349847
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:26641409..26660144hg38UCSC Ensembl
Innerchr22:27037373..27056108hg19UCSC Ensembl
Cytoband22q12.1
Allele length
AssemblyAllele length
hg3818736
hg1918736
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1311e212
Supporting Variantsessv9821968, essv9821967, essv9821972, essv9821969, essv9821971, essv9821970, essv9821973, essv9821966, essv9821974
Samples400247CL, 400574MA, 400977SC, 401795SP, 40050SB, 400732MA, 401681MS, 401177SL, 400782IE
Known GenesMIAT
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568335
Frequency
Sample Size873
Observed Gain0
Observed Loss9
Observed Complex0
Frequencyn/a


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