A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568256



Internal ID18696454
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:19697268..19702174hg38UCSC Ensembl
Innerchr22:19684791..19689697hg19UCSC Ensembl
Cytoband22q11.21
Allele length
AssemblyAllele length
hg384907
hg194907
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1287e212
Supporting Variantsessv9821099, essv9821101, essv9821098, essv9821103, essv9821102
Samples400797ST, 401870FB, 401039PA, 400444MM, 400243CK
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568256
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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