A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568243



Internal ID18349755
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:73534407..73583505hg38UCSC Ensembl
Innerchr14:74001111..74050209hg19UCSC Ensembl
Cytoband14q24.3
Allele length
AssemblyAllele length
hg3849099
hg1949099
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv656e212
Supporting Variantsessv9806626, essv9806625
Samples401057SS, 400053LE
Known GenesACOT1, ACOT2, HEATR4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568243
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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