A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568218



Internal ID18349730
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr21:45161040..45164836hg38UCSC Ensembl
Innerchr21:46580955..46584751hg19UCSC Ensembl
Cytoband21q22.3
Allele length
AssemblyAllele length
hg383797
hg193797
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9820642
Samples400782IE
Known GenesADARB1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568218
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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