A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568165



Internal ID18696363
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:73534407..73563198hg38UCSC Ensembl
Innerchr14:74001111..74029902hg19UCSC Ensembl
Cytoband14q24.3
Allele length
AssemblyAllele length
hg3828792
hg1928792
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv655e212
Supporting Variantsessv9806564, essv9806565, essv9806562, essv9806568, essv9806567, essv9806563
Samples400186WC, 400974PS, 400422PN, 401182OC, 401428LD, 400234CA
Known GenesACOT1, HEATR4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568165
Frequency
Sample Size873
Observed Gain6
Observed Loss0
Observed Complex0
Frequencyn/a


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