A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3568073



Internal ID18696271
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr20:56688223..56694907hg38UCSC Ensembl
Innerchr20:55263279..55269963hg19UCSC Ensembl
Cytoband20q13.31
Allele length
AssemblyAllele length
hg386685
hg196685
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9819919, essv9819918, essv9819915, essv9819917, essv9819909, essv9819911, essv9819916, essv9819914, essv9819912, essv9819913
Samples401093VL, 401674DD, 400827MM, 401879HJ, 402074RR, 400837HN, 400323AA, 401932GN, 400532MH, 400982BS
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3568073
Frequency
Sample Size873
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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