A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3567966



Internal ID18349478
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr20:41254287..41278414hg38UCSC Ensembl
Innerchr20:39882927..39907054hg19UCSC Ensembl
Cytoband20q12
Allele length
AssemblyAllele length
hg3824128
hg1924128
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv9819480, essv9819478, essv9819479
Samples400494ML, 400704LC, 400977SC
Known GenesZHX3
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)esv3567966
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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