Variant DetailsVariant: esv29822 Internal ID | 11047055 | Landmark | | Location Information | | Cytoband | 4q23 | Allele length | Assembly | Allele length | hg38 | 1084 | hg19 | 1084 | hg18 | 1084 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv13497, esv20737 | Samples | NA18502, NA11995, NA18861, NA18508, NA11931, NA12004, NA19190, NA12287, NA11993, NA12489, NA18907, NA07045, NA19114, NA11894, NA15510, NA19099, NA19225, NA06985, NA18523, NA18909, NA19108, NA19147, NA12749, NA19129, NA18511, NA12776 | Known Genes | PPP3CA | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv29822
| Frequency | Sample Size | 40 | Observed Gain | 24 | Observed Loss | 2 | Observed Complex | 0 | Frequency | n/a |
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