A curated catalogue of human genomic structural variation




Variant Details

Variant: esv28684



Internal ID11045917
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:42531133..42533762hg38UCSC Ensembl
Innerchr19:43035285..43037914hg19UCSC Ensembl
Innerchr19:47727125..47729754hg18UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg382630
hg192630
hg182630
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv11884
SamplesNA18505, NA19190, NA19099
Known GenesLIPE-AS1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv28684
Frequency
Sample Size40
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer