A curated catalogue of human genomic structural variation




Variant Details

Variant: esv28667



Internal ID11045900
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:88855465..88857315hg38UCSC Ensembl
Innerchr15:89398696..89400546hg19UCSC Ensembl
Innerchr15:87199700..87201550hg18UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg381851
hg191851
hg181851
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv14263
SamplesNA12878, NA18909
Known GenesACAN
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv28667
Frequency
Sample Size40
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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