Variant Details

Variant: esv28656

Internal ID

11392575

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:160604946..160648799	hg38	UCSC Ensembl
Inner	chr6:161025978..161069831	hg19	UCSC Ensembl
Inner	chr6:160945968..160989821	hg18	UCSC Ensembl

Cytoband

6q26

Allele length

Assembly	Allele length
hg38	43854
hg19	43854
hg18	43854

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

esv13232

Samples

NA18861, NA18508, NA12414, NA11931, NA12004, NA18916, NA12287, NA12828, NA11993, NA12489, NA12878, NA18907, NA07045, NA19114, NA11894, NA12239, NA15510, NA19099, NA19257, NA19225, NA06985, NA18523, NA18858, NA19108, NA19147, NA18517, NA19240, NA07037, NA12749, NA18505, NA19129, NA12006, NA18511, NA12776

Known Genes

LPA

Method

Oligo aCGH

Analysis

Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.

Platform

Sanger H. Sapiens 42mCGH Array 5781_53 726K v1

Comments

Reference

Conrad_et_al_2009

Pubmed ID

19812545

Accession Number(s)

esv28656

Frequency

Sample Size	40
Observed Gain	33
Observed Loss	1
Observed Complex	0
Frequency	n/a