Variant DetailsVariant: esv28110![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr6:32055886..32124504;width=800;overview=1) Internal ID | 11045343 | Landmark | | Location Information | | Cytoband | 6p21.32 | Allele length | Assembly | Allele length | hg38 | 68620 | hg19 | 68620 | hg18 | 68619 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv16306, esv17565, esv10803, esv16867, esv17264, esv11132 | Samples | NA18502, NA18508, NA12414, NA12004, NA18916, NA12287, NA12156, NA12828, NA11993, NA12489, NA12878, NA18907, NA19114, NA11894, NA15510, NA19225, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA18505, NA12006, NA18511 | Known Genes | C4A, C4B, C4B_2, CYP21A1P, CYP21A2, STK19, TNXA, TNXB | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv28110
| Frequency | Sample Size | 40 | Observed Gain | 10 | Observed Loss | 22 | Observed Complex | 0 | Frequency | n/a |
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