A curated catalogue of human genomic structural variation




Variant Details

Variant: esv28059



Internal ID11045292
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:11854176..11855136hg38UCSC Ensembl
Innerchr11:11875723..11876683hg19UCSC Ensembl
Innerchr11:11832299..11833259hg18UCSC Ensembl
Cytoband11p15.3
Allele length
AssemblyAllele length
hg38961
hg19961
hg18961
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv16498
SamplesNA12489, NA12414, NA07045, NA19225, NA19240
Known GenesUSP47
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv28059
Frequency
Sample Size40
Observed Gain3
Observed Loss2
Observed Complex0
Frequencyn/a


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