A curated catalogue of human genomic structural variation




Variant Details

Variant: esv27791



Internal ID11045024
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:146809686..146815984hg38UCSC Ensembl
InnerchrX:145891204..145897502hg19UCSC Ensembl
InnerchrX:145698896..145705194hg18UCSC Ensembl
CytobandXq27.3
Allele length
AssemblyAllele length
hg386299
hg196299
hg186299
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv15044, esv20716
SamplesNA11931, NA07045, NA12749, NA12776
Known GenesCXorf51A, CXorf51B
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv27791
Frequency
Sample Size40
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer