Variant Details

Variant: esv2764265

Internal ID

10031615

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:1696479..1741164	hg38	UCSC Ensembl
Inner	chr1:1627918..1672603	hg19	UCSC Ensembl
Inner	chr1:1617778..1662463	hg18	UCSC Ensembl

Cytoband

1p36.33

Allele length

Assembly	Allele length
hg38	44686
hg19	44686
hg18	44686

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv7004909, essv7004883, essv7004908, essv7004886, essv7004884, essv7004880, essv7004902, essv7004893, essv7004885, essv7004897, essv7004888, essv7004898, essv7004906, essv7004896, essv7004899, essv7004891, essv7004887, essv7004895, essv7004901, essv7004892, essv7004912, essv7004903, essv7004904, essv7004907, essv7004894, essv7004890, essv7004910, essv7004882, essv7004881, essv7004905

Samples

RW_0203, RW_0075, RW_0007, RW_0359, RW_0560, RW_0179, RW_0510, RW_0137, RW_0062, RW_0533, RW_0512, RW_0324, RW_0645, RW_0221, RW_0008, RW_0276, RW_0523, RW_0341, RW_0166, RW_0663, RW_0529, RW_0186, RW_0662, RW_0119, RW_0108, RW_0154, RW_0646, RW_0057, RW_0162

Known Genes

CDK11A, CDK11B, MMP23A, SLC35E2

Method

Merging

Analysis

Two different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.

Platform

Merging

Comments

Reference

Vogler_et_al_2010

Pubmed ID

21179565

Accession Number(s)

esv2764265

Frequency

Sample Size	1109
Observed Gain	2
Observed Loss	27
Observed Complex	0
Frequency	n/a